Idep.es - iDEP 2.0 - South Dakota State University

Provided by Alexa ranking, idep.es has ranked N/A in N/A and 6,639,956 on the world. idep.es reaches roughly 465 users per day and delivers about 13,938 users each month. The domain idep.es uses a Commercial suffix and it's server(s) are located in N/A with the IP number 134.0.9.189 and it is a .es domain.

WEBiDEP produces a barplot representing total read counts per library. When the library sizes are more than 3 times different, limma-trend method is not recommended for identifying DEGs. See the manual for limma . Bias in sequencing depth can exist in samples. The above is an example, where fewer reads in the p53 wild-type samples after radiation ...

List of domain same IP 134.0.9.189

Search Results related to idep.es on Search Engine

iDEP 2.0 - South Dakota State University
sdstate.edu

http://bioinformatics.sdstate.edu/idep/

WEBiDEP produces a barplot representing total read counts per library. When the library sizes are more than 3 times different, limma-trend method is not recommended for identifying DEGs. See the manual for limma . Bias in sequencing depth can exist in samples. The above is an example, where fewer reads in the p53 wild-type samples after radiation ...

DA: 49 PA: 82 MOZ Rank: 34

iDEP.96 - South Dakota State University
sdstate.edu

http://bioinformatics.sdstate.edu/idep96/

WEBAll new iDEP 1.1 released in testing mode on April 25, 2023. The new version includes both software and database updates. With Ensembl 107 and STRING-db 11.5, our database now has annotation for 14,000 species! If this server is busy, try our mirror site (faster) for iDEP 0.96, and iDEP 1.1.

DA: 44 PA: 91 MOZ Rank: 88

iDEP.94 - South Dakota State University
sdstate.edu

http://bioinformatics.sdstate.edu/idep94/

WEBPlease use the new version with latest annotation data iDEP 0.95. Feb. 19, 2022: R upgraded from 4.05 to 4.1.2. This solved the STRING API issues. Some Bioconductor packages are also upgraded.

DA: 7 PA: 38 MOZ Rank: 86

iDEP: an integrated web application for differential expression and
biomedcentral.com

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2486-6

WEBDec 19, 2018 · iDEP (integrated Differential Expression and Pathway analysis) seamlessly connects 63 R/Bioconductor packages, 2 web services, and comprehensive annotation and pathway databases for 220 plant and animal species. The workflow can be reproduced by downloading customized R code and related pathway files.

DA: 75 PA: 41 MOZ Rank: 62

GitHub - iDEP-SDSU/idep: Integrated Differential Expression and Pathway
github.com

https://github.com/iDEP-SDSU/idep

WEBInteractive tools for analyzing genomics data. This repository now only hosts code for our webserver and some legacy scripts. Please visit repositories for iDEP and ShinyGO, which are linked as submodules. iDEP is a Shiny app for analyzing RNA-seq or other transcriptomic data.

DA: 89 PA: 20 MOZ Rank: 97

iDEP web application for RNA-Seq data analysis - YouTube
youtube.com

https://www.youtube.com/watch?v=Hs5SamHHG9s

WEBJan 18, 2021 · This is a demo for using iDEP ( http://ge-lab.org/idep/) to analyze RNA-seq data. This follows chapter 22 of the RNA Bioinformatics, edited by E. Picardi, published by Springer Nature 2021.

DA: 53 PA: 96 MOZ Rank: 25

iDEP: An integrated web application for differential ... - bioRxiv
biorxiv.org

https://www.biorxiv.org/content/10.1101/148411v1

WEBJun 9, 2017 · iDEP (integrated Differential Expression and Pathway analysis) is a web application that reads in gene expression data from DNA microarray or RNA-Seq and performs exploratory data analysis (EDA), differential expression, and pathway analysis. The key idea of iDEP is to make many powerful R/Bioconductor packages easily …

DA: 78 PA: 28 MOZ Rank: 47

iDEP: An integrated web application for differential ... - bioRxiv
biorxiv.org

https://www.biorxiv.org/content/10.1101/148411v1.full.pdf

WEBAbstract: iDEP (integrated Differential Expression and Pathway analysis) is a web application that reads in gene expression data from DNA microarray or RNA-Seq and performs exploratory data analysis (EDA), differential expression, and pathway analysis.

DA: 37 PA: 14 MOZ Rank: 15

iDEP – an integrated web application for differential ... - RNA-Seq
rna-seqblog.com

https://www.rna-seqblog.com/idep-an-integrated-web-application-for-differential-expression-and-pathway-analysis-of-rna-seq-data/

WEBJan 31, 2019 · iDEP (integrated Differential Expression and Pathway analysis) seamlessly connects 63 R/Bioconductor packages, 2 web services, and comprehensive annotation and pathway databases for 220 plant and animal species. The workflow can be reproduced by downloading customized R code and related pathway files.

DA: 14 PA: 21 MOZ Rank: 49

iDEP.91 - South Dakota State University
sdstate.edu

http://bioinformatics.sdstate.edu/idep90/

WEBNew version 5/13/2021 in testing mode! iDEP v0.93beta includes upgrades to R 4.05, Bioconductor 3.12, larger database from Ensembl Release 103 and STRING-db v11. Fixed KEGG pathway chart and gene plot. We recently …

DA: 89 PA: 28 MOZ Rank: 5

Alexa Rank

GLOBAL RANK

6,639,956

Alexa Reach

0.0000205098

Page length

N/A

Alexa Rank Country N/A

N/A

Daily Unique Visitors

465

Monthly Unique Visitors

13,938

Vistor via Country

Country lang

Country code

Total visitor

Country

Country code

Total visitor

United States

2,981

Indonesia

2,332

Taiwan

758

United Kingdom

673

Brazil

609

Nigeria

532

Egypt

447

Hong Kong

422

Canada

422

Australia

368

Philippines

263

India

256

Malaysia

252

Spain

209

Germany

203

Mexico

195

France

184

Italy

170

Turkey

156

Iraq

142

Thailand

139

Netherlands

134

Israel

132

Cambodia

110

Algeria

Ireland

Romania

Jordan

Poland

Ghana

Argentina

South Africa

Belgium

Czechia

Ukraine

Japan

Morocco

South Korea

Lebanon

Saudi Arabia

Austria

Hungary

Sweden

Singapore

Pakistan

Bangladesh

Denmark

Greece

Alexa Traffic Graph

Alexa daily traffic trend graph

Alexa daily pageviews (percent) graph

Alexa Statistics Graph for www.nahklick.de

Alexa daily pageviews per user graph

Alexa time on site (in minutes) graph

Alexa bounce rate (percent) graph

Alexa search visits graph

SEOquake Zone

Title			Tips
Description			Tips
Keywords			Tips
Viewport			Tips
Icon
UTF-8

Mini site formation by Alexa Rank

MOZ Rank

DNS Record

Host	Type	Class	TTL	Extra
idep.es	A	IN	900	Ip: 134.0.9.189
idep.es	MX	IN	900	Pri: 10 Target: idep-es.mail.protection.outlook.com
idep.es	NS	IN	21600	Target: ns5.cdmondns-01.com
idep.es	NS	IN	21600	Target: ns2.cdmon.net
idep.es	NS	IN	21600	Target: ns3.cdmon.net
idep.es	NS	IN	21600	Target: ns4.cdmondns-01.org
idep.es	NS	IN	21600	Target: ns1.cdmon.net
idep.es	TXT	IN	300	Txt: adobe-idp-site-verification=f0e995b0065b51f29ab729fa4b0971dd2a9e4b7581a82ddb60b5ee4fa8f3a9e9 Entries_0: adobe-idp-site-verification=f0e995b0065b51f29ab729fa4b0971dd2a9e4b7581a82ddb60b5ee4fa8f3a9e9
idep.es	TXT	IN	300	Txt: facebook-domain-verification=77p4joha6phqq95e3w7ga9q8xnoj58 Entries_0: facebook-domain-verification=77p4joha6phqq95e3w7ga9q8xnoj58
idep.es	TXT	IN	300	Txt: v=spf1 include:spf.mailjet.com a mx include:spf.protection.outlook.com include:_spf.kmitd.com -all Entries_0: v=spf1 include:spf.mailjet.com a mx include:spf.protection.outlook.com include:_spf.kmitd.com -all
idep.es	SOA	IN	3600	Mname: ns1.cdmon.net Rname: hostmaster.idep.es Serial: 1 Refresh: 10800 Retry: 3600 Expire: 604800 Minimum-ttl: 3600

Hosting and Whois Zone

IP	134.0.9.189
Domain infomation	Conditions of use for the whois service via port 43 for .es domains Access will only be enabled for IP addresses authorised by Red.es. A maximum of one IP address per user/organisation is permitted. Red.es accepts no responsibility whatsoever for the availability of access to WHOIS, which may be suspended at any time and without prior warning at the discretion of the public entity. The service will be limited to the data established by Red.es. The user promises to make use of the service and to carry out any action derived from the aforesaid use in accordance with current applicable regulations, in particular with legislation on “.es” domain names and personal data protection. In particular, the user undertakes not to use the service to carry out abusive or speculative domain name registrations, pursuant to section 5 of the Sixth Additional Provision of Law 34/2002, of 11 July, on Services of the Information Society and Electronic Commerce. Likewise, the User undertakes not to use the service to obtain data, the possession of which may contravene the provisions of Organic Law 15/1999, of 13 December, on Personal Data Protection, and its Regulations, or in Law 34/2002, of 11 July, on Services of the Information Society and Electronic Commerce. Failure to comply with these conditions will result in the immediate withdrawal of the service and any registered domain name which breaches said conditions may be officially cancelled by Red.es. ------------------------------------------------------------------------------------------------------- The IP address used to perform the query is not authorised or has exceeded the established limit for queries.To request access to the service,complete the form located at https://sede.red.gob.es/sede/whois, where you may also consult the service conditions. ------------------------------------------------------------------------------------------------------- More information on each domain may be consulted at www.dominios.es.